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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147467198_147479314_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147467198 - 147479314
Intron Length:
12117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTTTTCTGAACT
Flanking Amino Acid:
FSLAMGACLGGNGTLIGASA
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.3
0.55
0.9
67.3
38.1
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
76.5
0.91
1.3
89.64
34

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306