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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147479409_147494415_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147479409 - 147494415
Intron Length:
15007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAGTC
5'SS Class:
major
3'SS Sequence:
TCTTTAACCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTCTTTAACC
Flanking Amino Acid:
IDNIPFTATMIPVLLNLSKD
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
66
38.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
72.1
0.5
0.8
66.8
33.1
Minor 5ss
33.7
-1.9
3.7
46.5
43.6
Minor BPS
91.5
1.28
0.7
94.26
21

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306