Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147500085_147516076_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147500085 - 147516076

Intron Length:

15992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTAATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CTTTTTCTAATG

Flanking Amino Acid:

SFVPGVYLDLGWIAILGAIW

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

27.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

82.9

0.74

0.9

78.7

33.4

Minor 5ss

44.9

-0.5

2.8

58.5

40.5

Minor BPS

55.4

0.03

1.7

62.82

40.1

Associated Gene:

Gene:

OCA2

Ensembl Gene ID:

ENSAPLG00000002607

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002647

147437676 - 147608981

171306