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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147517639_147519203_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147517639 - 147519203
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CATTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
AATTTCACACTG
Flanking Amino Acid:
LLRKKLRTFHKQISQEDKNW
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
87.2
0.84
0.7
84.9
29.5
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
42
-0.7
1.9
47.79
39.6

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306