Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147548332_147549319_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147548332 - 147549319

Intron Length:

988

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTTATTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

AGTCCCTTAATT

Flanking Amino Acid:

TGFFDYCAVKAYRFSRGKVW

Intron Amino Acid Position:

427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

78.8

38.3

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

81.1

0.7

0.9

82.3

34.1

Minor 5ss

42.4

-0.8

3.1

57.3

47.4

Minor BPS

0.96

1.1

85.15

34.6

Associated Gene:

Gene:

OCA2

Ensembl Gene ID:

ENSAPLG00000002607

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002647

147437676 - 147608981

171306