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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147549377_147550439_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147549377 - 147550439
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTAAA
5'SS Class:
major
3'SS Sequence:
CTTCTTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGCTAT
U12 Branch Point Sequence:
TTTTTCTTCTTT
Flanking Amino Acid:
YETLALLFGMMVLVAIFSET
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
77.8
31.4
Major BPS
46.9
-0.2
1.3
42.2
40.1
Major PPT
77.8
0.63
0.9
76.5
32.1
Minor 5ss
35.3
-1.7
2.7
39.2
40.4
Minor BPS
46
-0.2
3.6
82.89
39.2

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306