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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147551471_147567776_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147551471 - 147567776
Intron Length:
16306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACTTTTTAAACT
Flanking Amino Acid:
VGVYVLIILEIVHRTLAAML
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.9
0.67
0.9
73.7
35.9
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
62.9
0.48
1.6
77.06
40.2

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306