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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147567931_147568269_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147567931 - 147568269
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGCTAC
5'SS Class:
major
3'SS Sequence:
TTCCTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CATTACAGAATA
Flanking Amino Acid:
ITTRTFQMPNRGTIFINIQA
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.2
61.4
40.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.1
0.74
0.7
76.4
32.2
Minor 5ss
39.1
-1.2
3.1
50
46.7
Minor BPS
47
-0.2
1.9
59.75
39.7

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306