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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147570639_147579431_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
147570639 - 147579431
Intron Length:
8793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
ACCTTATTAACAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CAAACCTTAACA
Flanking Amino Acid:
MLAVSPLESFSMNLTDFHDS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.2
-0
1.3
50.1
41.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.2
0.48
1
66
38.2
Minor 5ss
95.2
1.52
0.7
94.3
17.7
Minor BPS
70.8
0.65
1.3
70.63
40.9

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306