About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147585310_147608712_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147585310 - 147608712
Intron Length:
23403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TGCAAACTAACT
Flanking Amino Acid:
KDFTQVPIQGRYHFNFSKLF
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
66
0.36
1
66.3
27.3
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
44.9
-0.3
2.1
65.07
44.2

Associated Gene:

Gene:
OCA2
Ensembl Gene ID:
ENSAPLG00000002607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002647
147437676 - 147608981
171306