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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147651369_147651666_R

Intron Information:

Intron Rank:
92
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147651369 - 147651666
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTGTTTTTGACA
Flanking Amino Acid:
DFRGRDFVIQVLDKYNPPDH
Intron Amino Acid Position:
4739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
54
0.1
1
59.7
32.6
Major PPT
82
0.72
1
79.9
37.7
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
72.3
0.7
1.1
77.15
33.9

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574