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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147651880_147652578_R

Intron Information:

Intron Rank:
91
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
147651880 - 147652578
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATCAATT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTAGCTTATCA
Flanking Amino Acid:
LFTGYELETMVCGSPDIPLH
Intron Amino Acid Position:
4668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
69.9
40.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
54.2
0.14
2.6
72.1
39.8
Minor BPS
52.5
0.08
2.1
68.98
43.1

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574