Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147652685_147654520_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147652685 - 147654520

Intron Length:

1836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTTGG

5'SS Class:

major

3'SS Sequence:

TGTGTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGAAAT

U12 Branch Point Sequence:

ATCCCTTGAAAT

Flanking Amino Acid:

AEYVRLAINYRLHEFDEQVA

Intron Amino Acid Position:

4632

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.2

63.5

43.2

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

80.1

0.68

0.9

73.8

36.9

Minor 5ss

-0.9

2.4

50.4

45.9

Minor BPS

54.6

0.22

1.6

70.22

40.3

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574