About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147654712_147655564_R

Intron Information:

Intron Rank:
89
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147654712 - 147655564
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTGTTTTTAACT
Flanking Amino Acid:
MNLTIADLSEVDKDFIPGLM
Intron Amino Acid Position:
4569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.1
0.48
1.2
74.8
38.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
75.2
0.87
1.2
82.67
39.4

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574