About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147655678_147655769_R

Intron Information:

Intron Rank:
88
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147655678 - 147655769
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATTTCT
5'SS Class:
major
3'SS Sequence:
TTTAAACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTATTTAAACT
Flanking Amino Acid:
LLHMNMFRFLGVLLGIAIRT
Intron Amino Acid Position:
4531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.3
37
Major BPS
80
0.75
1
78.6
31
Major PPT
78
0.63
0.9
70.1
40.1
Minor 5ss
42.5
-0.8
2.8
51.6
44.8
Minor BPS
59
0.36
1.7
76.69
40.1

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574