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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147662946_147664055_R

Intron Information:

Intron Rank:
85
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147662946 - 147664055
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGCAACTTAATT
Flanking Amino Acid:
LRGILISQGKEAAFRKVVQA
Intron Amino Acid Position:
4391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
79.8
33.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
46.5
-0.4
2.5
63.1
41.4
Minor BPS
62.6
0.47
1.6
74.64
42

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574