Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147666014_147666410_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147666014 - 147666410

Intron Length:

397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAATATC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTGTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

AATGTTTTATCT

Flanking Amino Acid:

ALTKSGAVYTWGKGDYHRLG

Intron Amino Acid Position:

4215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

80.3

32.2

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

80.8

0.69

0.9

76.4

32.2

Minor 5ss

39.8

-1.1

2.9

51.1

Minor BPS

54.4

0.22

1.7

70.58

40.8

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574