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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147669592_147670295_R

Intron Information:

Intron Rank:
79
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147669592 - 147670295
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTATCCTAAAAG
Flanking Amino Acid:
EDGKLGHGNRSPCDRPRVIE
Intron Amino Acid Position:
4071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
100
1.24
0.5
100
0
Major PPT
85.4
0.8
0.8
82.7
32.9
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
55.6
0.04
1.9
61.4
46

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574