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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147673175_147673302_R

Intron Information:

Intron Rank:
77
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147673175 - 147673302
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTATTGAT
5'SS Class:
major
3'SS Sequence:
AAATTTTATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTTATAACT
Flanking Amino Acid:
QDEQLVQWMNRRPDDWTLSA
Intron Amino Acid Position:
3933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
75.4
34.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.4
0.41
1
63.6
42
Minor 5ss
30.8
-2.2
3.1
41.4
45
Minor BPS
67.9
0.64
1.6
83.99
37.1

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574