About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147673419_147673566_R

Intron Information:

Intron Rank:
76
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147673419 - 147673566
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCAG
5'SS Class:
major
3'SS Sequence:
AAATATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CATTGTTTAATC
Flanking Amino Acid:
TPLPRLFLDEVAKKIRELMA
Intron Amino Acid Position:
3895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
55
43.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
73.5
0.53
1
65.7
44.1
Minor 5ss
36.3
-1.6
3.2
46.8
48.6
Minor BPS
59.6
0.28
1.8
66.7
39.8

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574