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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147674794_147675155_R

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147674794 - 147675155
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
AATGCATAGACA
Flanking Amino Acid:
GDNDGETRALSFTGSALAAL
Intron Amino Acid Position:
3801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.4
46
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
73.3
0.52
0.9
66.1
40.8
Minor 5ss
38.9
-1.2
2.8
45.7
43.7
Minor BPS
46.3
-0.3
2
58.62
40.8

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574