About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147675275_147675364_R

Intron Information:

Intron Rank:
73
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147675275 - 147675364
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GTGTGCTTATGT
Flanking Amino Acid:
LAACAQLSALAAGHRMWALQ
Intron Amino Acid Position:
3761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
75.4
0.57
0.8
74.1
36.3
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
47.4
-0.1
2.3
68.18
48.3

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574