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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147676436_147677517_R

Intron Information:

Intron Rank:
71
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147676436 - 147677517
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTCTTC
5'SS Class:
major
3'SS Sequence:
CCTGCTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATATTACCT
Flanking Amino Acid:
GVNRIVSVRSGREWSDWSSE
Intron Amino Acid Position:
3664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.1
62.2
39.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
66.6
0.37
1
60.9
39.1
Minor 5ss
42
-0.9
3.2
59
45.8
Minor BPS
50.6
0.1
1.9
73.21
43.6

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574