Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147681270_147682035_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147681270 - 147682035

Intron Length:

766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGTATCA

5'SS Class:

major

3'SS Sequence:

TCATTTTGGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTGTTAATGACT

Flanking Amino Acid:

PNPWQDRRGEVVSSEDAVTP

Intron Amino Acid Position:

3466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

64.2

36.6

Major BPS

84.4

0.85

34.5

Major PPT

65.4

0.35

1.1

61.7

44.3

Minor 5ss

36.9

-1.5

3.2

48.6

Minor BPS

0.14

1.9

76.88

39.6

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574