Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147684260_147684919_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147684260 - 147684919

Intron Length:

660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTATTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

AAGTAATAAATA

Flanking Amino Acid:

HCLAVTDTGQVYAWGDNDHG

Intron Amino Acid Position:

3281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.3

32.2

Major BPS

70.8

0.52

70.6

31.6

Major PPT

0.61

73.8

40.8

Minor 5ss

48.4

-0.1

2.8

67.4

Minor BPS

44.4

-0.4

53.18

38.9

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574