About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147685065_147686873_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147685065 - 147686873
Intron Length:
1809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTTAA
5'SS Class:
major
3'SS Sequence:
CTATCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCCTGAATT
Flanking Amino Acid:
ALTKSGVVWTWGKGDYFRLG
Intron Amino Acid Position:
3232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.1
34
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75.2
0.57
0.9
73.3
36.9
Minor 5ss
38.6
-1.3
3
45.8
44.7
Minor BPS
77.4
0.94
1.3
88.94
35.9

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574