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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147687210_147688008_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147687210 - 147688008
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTAA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TCTCTTTGAAAC
Flanking Amino Acid:
DNTTQLKPKMVKVLLGHRVI
Intron Amino Acid Position:
3148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67
34.3
Major BPS
69.1
0.48
1
70
32.1
Major PPT
84.4
0.77
0.7
80.5
31.5
Minor 5ss
35.5
-1.6
3.4
43
46.5
Minor BPS
50.8
0
1.5
61.4
37.7

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574