Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147689755_147690286_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147689755 - 147690286

Intron Length:

532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGGCT

5'SS Class:

major

3'SS Sequence:

TTTTTACTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTGTTTTTACTT

Flanking Amino Acid:

YVVKKVAVHSGGRHAMALTV

Intron Amino Acid Position:

3058

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.1

63.5

40.9

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

91.7

0.94

0.7

89.8

25.4

Minor 5ss

30.9

-2.2

3.7

48.2

47.4

Minor BPS

63.3

0.5

1.6

78.42

39.1

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574