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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147692379_147692880_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147692379 - 147692880
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TAAATATCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TACTCCTAAATA
Flanking Amino Acid:
EEDDDKANTGSLVRKKAAGL
Intron Amino Acid Position:
2945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
67.2
0.39
1
63.3
42.5
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
66.1
0.5
1.7
72.14
40.4

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574