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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147693057_147693631_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147693057 - 147693631
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAG
U12 Branch Point Sequence:
AAGACGGCAATT
Flanking Amino Acid:
TVPLLSDCTEYHRYIEIAIK
Intron Amino Acid Position:
2887

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
49
-0
1.5
52.7
43.2
Major PPT
88.6
0.87
0.6
89
20.1
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
36.9
-0.9
2.5
52.37
42.6

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574