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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147696658_147696806_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147696658 - 147696806
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTGTGAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTGTGAAAT
Flanking Amino Acid:
ELVPSIHPGVTCDGCQMFPI
Intron Amino Acid Position:
2710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.5
32.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66
0.36
1.1
64.6
44.9
Minor 5ss
30.3
-2.3
3.2
39.2
39.9
Minor BPS
48.7
-0
2.2
73.47
43.3

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574