Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147696916_147697825_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147696916 - 147697825

Intron Length:

910

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGTAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTGTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTTTGTTACAG

Flanking Amino Acid:

VTHRSVGVVKAFSANGKDVI

Intron Amino Acid Position:

2674

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

77.6

33.1

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

85.5

0.8

0.9

79.9

37.7

Minor 5ss

38.5

-1.3

3.4

55.5

48.6

Minor BPS

47.5

-0.3

2.4

63.72

44.3

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574