About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147699683_147699837_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147699683 - 147699837
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAT
5'SS Class:
major
3'SS Sequence:
TTTTCTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAC
U12 Branch Point Sequence:
TTTTCTGTATTA
Flanking Amino Acid:
GTSGSASGLPGVEALVGWLL
Intron Amino Acid Position:
2496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
72.5
38.4
Major BPS
63.6
0.34
1.2
55.1
42.1
Major PPT
77.7
0.62
0.9
78.5
34.7
Minor 5ss
42
-0.9
2.8
58.7
45.8
Minor BPS
53.8
0.12
2.2
74.5
38.1

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574