Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147700106_147700305_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147700106 - 147700305

Intron Length:

200

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGAGTCT

5'SS Class:

major

3'SS Sequence:

TGTTGTCGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAT

U12 Branch Point Sequence:

TTTTACTTACAC

Flanking Amino Acid:

KAIFDKQELEAAALAVCQYL

Intron Amino Acid Position:

2407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

66.4

39.9

Major BPS

74.4

0.61

0.9

73.6

28.6

Major PPT

72.1

0.5

70.2

41.3

Minor 5ss

37.3

-1.4

3.6

56.2

48.2

Minor BPS

60.8

0.32

1.9

76.85

38.8

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574