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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147700449_147702450_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147700449 - 147702450
Intron Length:
2002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTGGTTAAAA
Flanking Amino Acid:
AVQECALNSAEDGAAASPDI
Intron Amino Acid Position:
2359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
66.9
38.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
80.3
0.68
1
79.2
38.4
Minor 5ss
38.2
-1.3
3.1
50
46.2
Minor BPS
53
0.09
2.5
76.43
40.8

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574