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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147704200_147704420_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147704200 - 147704420
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGTTTCC
5'SS Class:
major
3'SS Sequence:
TGTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTACAGTTAATT
Flanking Amino Acid:
HIFAGKQSEGALLDDYFPDT
Intron Amino Acid Position:
2189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
59.6
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.6
0.71
0.7
81
31
Minor 5ss
39.7
-1.2
3
44.9
43.2
Minor BPS
47.7
-0
2.2
67.18
43.5

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574