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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147704618_147704711_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147704618 - 147704711
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGAGGAA
5'SS Class:
major
3'SS Sequence:
TTTATCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ATTGCTTTATCT
Flanking Amino Acid:
TCSSDIPLLRESTLRRRKAR
Intron Amino Acid Position:
2123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.6
37.9
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
90.7
0.92
0.7
88.8
28
Minor 5ss
26.5
-2.7
3.7
36.6
47.9
Minor BPS
65.2
0.56
1.7
81.9
40

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574