Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147704860_147705468_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

147704860 - 147705468

Intron Length:

609

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGTGT

5'SS Class:

major

3'SS Sequence:

TTCTCTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAGAAT

U12 Branch Point Sequence:

AATGGAATAACA

Flanking Amino Acid:

SFTAASLQRQILAVHLLKAV

Intron Amino Acid Position:

2074

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.2

70.4

42.5

Major BPS

62.9

0.32

1.5

72.3

40.4

Major PPT

88.5

0.87

0.6

88.4

21.3

Minor 5ss

-0.7

3.3

46.2

Minor BPS

43.1

-0.5

2.2

57.32

41.5

Associated Gene:

Gene:

HERC2

Ensembl Gene ID:

ENSAPLG00000003410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003662

147651096 - 147757669

106574