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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147705654_147706205_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147705654 - 147706205
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCA
5'SS Class:
major
3'SS Sequence:
TTTCTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GTCTTTCTATTT
Flanking Amino Acid:
LVESGTIDKSASLPNKLVYK
Intron Amino Acid Position:
2012

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
72.2
33.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.6
0.82
0.7
85.7
27.6
Minor 5ss
46.6
-0.3
2.4
59.8
44.6
Minor BPS
46.7
-0.1
1.8
64.22
41.1

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574