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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147709438_147709526_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147709438 - 147709526
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAACTT
5'SS Class:
major
3'SS Sequence:
TTGTTATGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
AAATACTTACCT
Flanking Amino Acid:
QRLIPEGANIGEPLTDCLKD
Intron Amino Acid Position:
1709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
66.7
0.38
1.2
68.4
41.5
Minor 5ss
36.8
-1.5
3.4
48.6
47
Minor BPS
58
0.33
1.8
73.97
42

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574