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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147711363_147711484_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147711363 - 147711484
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATCTTTCAAT
Flanking Amino Acid:
VYQAKCSLIKTHQEQGRSYK
Intron Amino Acid Position:
1495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.4
0.64
0.8
73.2
36.7
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
56.7
0.29
1.9
75.33
41

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574