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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147713627_147713731_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147713627 - 147713731
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
CTATTCTGACTA
Flanking Amino Acid:
TQSLTGNSILAQFAGEDPVV
Intron Amino Acid Position:
1251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
79.2
0.72
1
75
40
Major PPT
72.3
0.5
0.9
71.9
33.3
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
49.2
-0
1.7
60.19
40.3

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574