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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147713903_147714995_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147713903 - 147714995
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TTTATACCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTGTTAATA
Flanking Amino Acid:
NEDLAWPGIMGSFFTGQSCR
Intron Amino Acid Position:
1194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
66.1
41.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.1
0.61
0.8
71.5
34.4
Minor 5ss
39.6
-1.2
3
44.8
43.3
Minor BPS
60.8
0.33
2
76.1
35.4

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574