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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147715626_147715973_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147715626 - 147715973
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
GCTTTTTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTTTTTATAC
Flanking Amino Acid:
DCVGQVPNTYSPDLLGVGSL
Intron Amino Acid Position:
1080

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.4
0.71
0.9
76.3
36.9
Minor 5ss
38.1
-1.3
3.1
55.9
42.3
Minor BPS
49.7
-0
1.7
59.38
40

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574