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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147717120_147718391_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147717120 - 147718391
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTCTTAAACT
Flanking Amino Acid:
LNAAITAEIQDIEAKKEAQK
Intron Amino Acid Position:
959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
88.1
28.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.6
0.6
0.8
73.9
35.7
Minor 5ss
45.1
-0.5
3.1
67
44.3
Minor BPS
79.4
1
1.5
95.57
31.2

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574