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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147718517_147718588_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147718517 - 147718588
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTCT
5'SS Class:
major
3'SS Sequence:
TTTCTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AGTTCATTAATA
Flanking Amino Acid:
RALSALLPSAVSGNEMNVSP
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
38.1
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
86.6
0.82
0.7
85.7
27.6
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
69.7
0.61
1.5
76.17
34.4

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574