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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147718818_147719483_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
147718818 - 147719483
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTAA
5'SS Class:
weak_major
3'SS Sequence:
TCTTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AATTTCCCATTT
Flanking Amino Acid:
VATLNLLRLQLHAAISHQVD
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
62.2
41
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
47.6
-0.2
2.9
64.5
46.9
Minor BPS
44.7
-0.3
2
64.36
40.1

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574