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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147719685_147720135_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147719685 - 147720135
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTCTGTTTATA
Flanking Amino Acid:
IVGIACGPAQSFAWSSCSEW
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
84.8
0.78
0.8
80.1
32
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
47.9
-0.1
2.3
67.89
38.5

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574