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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147720330_147721151_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147720330 - 147721151
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTACTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TACTTTTTTACT
Flanking Amino Acid:
RYPKLLEGLKGKKVIDVAAG
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
80
0.75
1
78.6
31
Major PPT
84.6
0.78
0.8
84.7
29
Minor 5ss
36.1
-1.6
2.7
46.4
41.8
Minor BPS
61.8
0.45
1.6
75.92
41.3

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574