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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147723448_147725210_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147723448 - 147725210
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATGTAAT
5'SS Class:
major
3'SS Sequence:
TCTCTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTCTCTTTAAAC
Flanking Amino Acid:
DGGRLGHGDTVPLEEPKLIS
Intron Amino Acid Position:
534

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
72.6
38.2
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
76.1
0.59
0.9
73.4
34.9
Minor 5ss
45.5
-0.5
2.6
60.3
44.3
Minor BPS
75.3
0.77
1.3
79.33
36

Associated Gene:

Gene:
HERC2
Ensembl Gene ID:
ENSAPLG00000003410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003662
147651096 - 147757669
106574